Update occurrence data — rfs_update_occ

This function checks the occurrence data against a reference list and update it.

Usage

rfs_update_occ_data(
  species_database,
  occurrence_df,
  family_names = "auto",
  folder = "data"
)

Arguments

species_database: Species database according to rFishStatus template (see rFishStatus::data_template_ref).
occurrence_df: Occurrence dataframe obtained from rFishStatus::rfs_download_occ_data().
family_names: Family names to be used in the filtering occurrence dataframe. Default is "auto".
folder: Folder name where the data will be saved. Default is "data".

Value

Occurrence dataframe with updated species names based on the reference dataset (see columns with "ref" suffix) or FishBase catalog (see columns with "fb" suffix).

Examples

rfs_update_occ_data(species_database = rFishStatus::data_template_ref,
                    occurrence_df = occ_df)
#> Error: object 'occ_df' not found